HL_8EUB_089

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8EUB|1|B5|A|452, 8EUB|1|B5|U|454, 8EUB|1|B5|C|455

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_089 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2705

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8EUB|1|B5|U|450
8EUB|1|B5|A|451
8EUB|1|B5|A|452
8EUB|1|B5|U|453
8EUB|1|B5|U|454
8EUB|1|B5|C|455
8EUB|1|B5|A|456

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A