HL_8EUB_115

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CAUCGAAAACUCUCCGAACACGGUGU*G

Length

27 nucleotides

Bulged bases

8EUB|1|EC|A|6792, 8EUB|1|EC|C|6794

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_115 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2774

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EUB|1|EC|C|6785
8EUB|1|EC|A|6786
8EUB|1|EC|U|6787
8EUB|1|EC|C|6788
8EUB|1|EC|G|6789
8EUB|1|EC|A|6790
8EUB|1|EC|A|6791
8EUB|1|EC|A|6792
8EUB|1|EC|A|6793
8EUB|1|EC|C|6794
8EUB|1|EC|U|6795
8EUB|1|EC|C|6796
8EUB|1|EC|U|6797
8EUB|1|EC|C|6798
8EUB|1|EC|C|6799
8EUB|1|EC|G|6800
8EUB|1|EC|A|6801
8EUB|1|EC|A|6802
8EUB|1|EC|C|6803
8EUB|1|EC|A|6804
8EUB|1|EC|C|6805
8EUB|1|EC|G|6808
8EUB|1|EC|G|6809
8EUB|1|EC|U|6810
8EUB|1|EC|G|6811
8EUB|1|EC|U|6810
*
8EUB|1|EC|G|6811

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains