HL_8EV6_042

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV6_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.2062

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

8EV6|1|1A|U|1765
8EV6|1|1A|G|1766
8EV6|1|1A|A|1767
8EV6|1|1A|U|1768
8EV6|1|1A|G|1769
8EV6|1|1A|A|1770
8EV6|1|1A|G|1771

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains