HL_8EV7_053

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8EV7|1|1A|A|2280, 8EV7|1|1A|C|2287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV7_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0504

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8EV7|1|1A|C|2276
8EV7|1|1A|U|2277
8EV7|1|1A|A|2278
8EV7|1|1A|A|2279
8EV7|1|1A|A|2280
8EV7|1|1A|A|2281
8EV7|1|1A|G|2282
8EV7|1|1A|G|2283
8EV7|1|1A|U|2284
8EV7|1|1A|A|2285
8EV7|1|1A|A|2286
8EV7|1|1A|C|2287
8EV7|1|1A|G|2288

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16