HL_8EV7_060

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

8EV7|1|1A|G|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV7_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0562

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8EV7|1|1A|U|2540
8EV7|1|1A|G|2541
8EV7|1|1A|A|2542
8EV7|1|1A|A|2543
8EV7|1|1A|G|2544
8EV7|1|1A|A|2545
8EV7|1|1A|A|2546
8EV7|1|1A|G|2547

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6