HL_8EVP_014
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGUCUUG(1MA)AAC(A2M)(OMC)G
- Length
- 14 nucleotides
- Bulged bases
- 8EVP|1|A1|C|648
- QA status
- Modified nucleotides: 1MA, A2M, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_014 not in the Motif Atlas
- Geometric match to HL_4V9F_011
- Geometric discrepancy: 0.1289
- The information below is about HL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8EVP|1|A1|C|638
8EVP|1|A1|G|639
8EVP|1|A1|U|640
8EVP|1|A1|C|641
8EVP|1|A1|U|642
8EVP|1|A1|U|643
8EVP|1|A1|G|644
8EVP|1|A1|1MA|645
8EVP|1|A1|A|646
8EVP|1|A1|A|647
8EVP|1|A1|C|648
8EVP|1|A1|A2M|649
8EVP|1|A1|OMC|650
8EVP|1|A1|G|651
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AC
- RPL4A isoform 1
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- RPL32 isoform 1
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