8EVP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8EVP_001 | 1/A1/38:45 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_8EVP_002 | 1/A1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8EVP_003 | 1/A1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8EVP_004 | 1/A1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8EVP_005 | 1/A1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8EVP_006 | 1/A1/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_8EVP_007 | 1/A1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8EVP_008 | 1/A1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8EVP_009 | 1/A1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8EVP_010 | 1/A1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8EVP_011 | 1/A1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8EVP_013 | 1/A1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_8EVP_120 | 1/A1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8EVP_015 | 1/A1/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8EVP_016 | 1/A1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8EVP_017 | 1/A1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_8EVP_018 | 1/A1/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8EVP_019 | 1/A1/844:849 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8EVP_121 | 1/A1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8EVP_021 | 1/A1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8EVP_022 | 1/A1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8EVP_024 | 1/A1/1076:1083 | T-loop related | homologous HL_8P9A_136 HL_63894.2 | |
| HL_8EVP_025 | 1/A1/1126:1132 | GNRA | geometric HL_5TBW_025 NA | |
| HL_8EVP_026 | 1/A1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8EVP_029 | 1/A1/1347:1357 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_8EVP_030 | 1/A1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8EVP_031 | 1/A1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8EVP_032 | 1/A1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8EVP_033 | 1/A1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8EVP_034 | 1/A1/1562:1577 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_8EVP_035 | 1/A1/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_8EVP_036 | 1/A1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8EVP_037 | 1/A1/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8EVP_038 | 1/A1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_8EVP_039 | 1/A1/1759:1766 | No text annotation | homologous HL_8C3A_039 NA | |
| HL_8EVP_040 | 1/A1/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_8EVP_041 | 1/A1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8EVP_042 | 1/A1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_8EVP_043 | 1/A1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8EVP_045 | 1/A1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8EVP_046 | 1/A1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8EVP_047 | 1/A1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8EVP_048 | 1/A1/2219:2226 | No text annotation | geometric HL_6CF2_001 HL_92598.1 | |
| HL_8EVP_049 | 1/A1/2253:2263 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_8EVP_050 | 1/A1/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8EVP_051 | 1/A1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8EVP_053 | 1/A1/2535:2544 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_8EVP_054 | 1/A1/2568:2573 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_8EVP_055 | 1/A1/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8EVP_056 | 1/A1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_8EVP_057 | 1/A1/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8EVP_058 | 1/A1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8EVP_122 | 1/A1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8EVP_060 | 1/A1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8EVP_061 | 1/A1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8EVP_062 | 1/A1/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8EVP_063 | 1/A1/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8EVP_064 | 1/A1/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8EVP_065 | 1/A1/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8EVP_066 | 1/A1/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8EVP_067 | 1/A1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8EVP_068 | 1/A1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8EVP_069 | 1/A1/3194:3197 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8EVP_070 | 1/A1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_8EVP_071 | 1/A1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8EVP_072 | 1/A1/3350:3353 | Mini UNCG | homologous HL_5TBW_071 NA | |
| HL_8EVP_123 | 1/A3/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8EVP_073 | 1/A3/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_8EVP_074 | 1/A3/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_8EVP_124 | 1/A4/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8EVP_075 | 1/A4/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_8EVP_076 | 1/A4/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8EVP_077 | 1/A4/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_8EVP_078 | 1/B5/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8EVP_079 | 1/B5/70:81 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_8EVP_080 | 1/B5/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8EVP_081 | 1/B5/186:199 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_8EVP_083 | 1/B5/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_8EVP_085 | 1/B5/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8EVP_086 | 1/B5/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8EVP_087 | 1/B5/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8EVP_125 | 1/B5/414:419 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8EVP_089 | 1/B5/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8EVP_091 | 1/B5/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_8EVP_092 | 1/B5/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8EVP_095 | 1/B5/763:771 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8EVP_096 | 1/B5/776:782 | No text annotation | homologous HL_4V88_204 NA | |
| HL_8EVP_097 | 1/B5/827:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_8EVP_098 | 1/B5/899:908 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8EVP_099 | 1/B5/936:941 | GNRA | homologous HL_4V88_207 NA | |
| HL_8EVP_128 | 1/B5/996:1006 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8EVP_101 | 1/B5/1054:1063 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_8EVP_102 | 1/B5/1083:1088 | GNRA | homologous HL_4V88_210 NA | |
| HL_8EVP_129 | 1/B5/1120:1125 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8EVP_104 | 1/B5/1187:1805 | No text annotation | homologous HL_4V88_212 NA | |
| HL_8EVP_116 | 1/EC/6838:6845 | No text annotation | geometric HL_7KI3_001 HL_75660.7 | |
| HL_8EVP_131 | 1/EC/6862:6868 | No text annotation | ||
| HL_8EVP_118 | 1/EC/6899:6915 | Externally structured | geometric HL_8C3A_022 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8EVP_012 | No text annotation | ||
| HL_8EVP_014 | No text annotation | ||
| HL_8EVP_020 | No text annotation | ||
| HL_8EVP_023 | No text annotation | ||
| HL_8EVP_027 | No text annotation | ||
| HL_8EVP_028 | GNRA wlth tandem sheared | ||
| HL_8EVP_044 | No text annotation | ||
| HL_8EVP_052 | No text annotation | ||
| HL_8EVP_059 | tRNA anticodon loop | ||
| HL_8EVP_082 | No text annotation | ||
| HL_8EVP_084 | Mini UNCG | ||
| HL_8EVP_088 | No text annotation | ||
| HL_8EVP_126 | No text annotation | ||
| HL_8EVP_090 | No text annotation | ||
| HL_8EVP_093 | No text annotation | ||
| HL_8EVP_127 | No text annotation | ||
| HL_8EVP_094 | No text annotation | ||
| HL_8EVP_100 | tRNA D-loop | ||
| HL_8EVP_103 | GNRA with extra cWW | ||
| HL_8EVP_105 | Anticodon loop related | ||
| HL_8EVP_106 | GNRA | ||
| HL_8EVP_107 | No text annotation | ||
| HL_8EVP_108 | No text annotation | ||
| HL_8EVP_130 | No text annotation | ||
| HL_8EVP_109 | GNRA | ||
| HL_8EVP_110 | GNRA | ||
| HL_8EVP_111 | No text annotation | ||
| HL_8EVP_112 | No text annotation | ||
| HL_8EVP_113 | No text annotation | ||
| HL_8EVP_114 | GNRA variation | ||
| HL_8EVP_115 | No text annotation | ||
| HL_8EVP_117 | No text annotation | ||
| HL_8EVP_119 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8EVP_002 | 1/A1/7:8, 1/A4/150:152 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_8EVP_003 | 1/A1/13:15, 1/A4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8EVP_004 | 1/A1/27:28, 1/A1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8EVP_005 | 1/A1/31:38, 1/A1/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_8EVP_006 | 1/A1/82:89, 1/A1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8EVP_007 | 1/A1/123:124, 1/A1/144:149 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_8EVP_008 | 1/A1/125:127, 1/A1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8EVP_009 | 1/A1/163:165, 1/A1/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_8EVP_010 | 1/A1/168:170, 1/A1/247:254 | No text annotation | ||
| IL_8EVP_012 | 1/A1/172:178, 1/A1/238:245 | No text annotation | ||
| IL_8EVP_013 | 1/A1/189:191, 1/A1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8EVP_014 | 1/A1/337:339, 1/A4/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_8EVP_015 | 1/A1/376:379, 1/A1/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_8EVP_016 | 1/A1/404:410, 1/A4/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8EVP_017 | 1/A1/417:419, 1/A4/4:6 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.3 | |
| IL_8EVP_018 | 1/A1/429:431, 1/A1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_8EVP_020 | 1/A1/512:513, 1/A1/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_8EVP_021 | 1/A1/517:525, 1/A1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_8EVP_022 | 1/A1/531:539, 1/A1/552:561 | No text annotation | ||
| IL_8EVP_023 | 1/A1/668:670, 1/A1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8EVP_024 | 1/A1/680:684, 1/A1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_8EVP_025 | 1/A1/725:728, 1/A1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8EVP_026 | 1/A1/752:753, 1/A1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8EVP_027 | 1/A1/755:756, 1/A1/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_8EVP_028 | 1/A1/758:763, 1/A1/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_8EVP_257 | 1/A1/803:805, 1/A1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8EVP_258 | 1/A1/805:809, 1/A1/931:938 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_8EVP_031 | 1/A1/828:829, 1/A1/895:897 | Single bulged A | geometric IL_4V9F_025 IL_14190.2 | |
| IL_8EVP_032 | 1/A1/833:834, 1/A1/859:861 | Single bulged G | geometric IL_7A0S_017 IL_28408.2 | |
| IL_8EVP_033 | 1/A1/834:838, 1/A1/855:859 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8EVP_034 | 1/A1/869:872, 1/A1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8EVP_035 | 1/A1/873:875, 1/A1/886:887 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_8EVP_036 | 1/A1/907:909, 1/A1/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_8EVP_037 | 1/A1/969:970, 1/A1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8EVP_038 | 1/A1/977:982, 1/A1/1101:1104 | No text annotation | ||
| IL_8EVP_039 | 1/A1/983:985, 1/A1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8EVP_040 | 1/A1/991:997, 1/A1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_8EVP_041 | 1/A1/997:998, 1/A1/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8EVP_042 | 1/A1/999:1004, 1/A1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8EVP_259 | 1/A1/1006:1009, 1/A1/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_8EVP_044 | 1/A1/1009:1011, 1/A1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_8EVP_045 | 1/A1/1069:1071, 1/A1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8EVP_046 | 1/A1/1074:1076, 1/A1/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_8EVP_047 | 1/A1/1120:1122, 1/A1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8EVP_049 | 1/A1/1167:1171, 1/A1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8EVP_050 | 1/A1/1173:1180, 1/A1/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_8EVP_051 | 1/A1/1180:1182, 1/A1/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_8EVP_052 | 1/A1/1187:1194, 1/A1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8EVP_053 | 1/A1/1194:1205, 1/A1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8EVP_054 | 1/A1/1207:1209, 1/A1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8EVP_055 | 1/A1/1218:1226, 1/A1/1283:1287 | Kink-turn | geometric IL_4V9F_042 IL_99692.3 | |
| IL_8EVP_060 | 1/A1/1376:1378, 1/A1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8EVP_061 | 1/A1/1385:1387, 1/A1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8EVP_062 | 1/A1/1388:1395, 1/A1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8EVP_063 | 1/A1/1398:1400, 1/A1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8EVP_261 | 1/A1/1444:1450, 1/A1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_8EVP_278 | 1/A1/1501:1505, 1/A1/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_8EVP_066 | 1/A1/1532:1536, 1/A1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8EVP_067 | 1/A1/1618:1621, 1/A1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8EVP_068 | 1/A1/1623:1624, 1/A1/1820:1822 | Single bulged U | geometric IL_2R8S_004 IL_97561.3 | |
| IL_8EVP_069 | 1/A1/1625:1631, 1/A1/1811:1819 | No text annotation | ||
| IL_8EVP_070 | 1/A1/1645:1649, 1/A1/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8EVP_071 | 1/A1/1661:1663, 1/A1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8EVP_072 | 1/A1/1669:1670, 1/A1/1778:1780 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8EVP_073 | 1/A1/1670:1671, 1/A1/1776:1778 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8EVP_074 | 1/A1/1702:1707, 1/A1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_8EVP_075 | 1/A1/1711:1717, 1/A1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8EVP_076 | 1/A1/1883:1889, 1/A1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8EVP_077 | 1/A1/1895:1897, 1/A1/2338:2340 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_8EVP_262 | 1/A1/1898:1901, 1/A1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8EVP_263 | 1/A1/1898:1906, 1/A1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8EVP_079 | 1/A1/1901:1906, 1/A1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8EVP_080 | 1/A1/1918:1923, 1/A1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8EVP_081 | 1/A1/1940:1942, 1/A1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8EVP_082 | 1/A1/1947:1948, 1/A1/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8EVP_084 | 1/A1/2128:2129, 1/A1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8EVP_085 | 1/A1/2156:2161, 1/A1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8EVP_086 | 1/A1/2196:2199, 1/A1/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8EVP_087 | 1/A1/2200:2201, 1/A1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8EVP_088 | 1/A1/2204:2206, 1/A1/2237:2238 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8EVP_089 | 1/A1/2206:2210, 1/A1/2235:2237 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_82096.1 | |
| IL_8EVP_090 | 1/A1/2211:2217, 1/A1/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8EVP_091 | 1/A1/2276:2277, 1/A1/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_8EVP_264 | 1/A1/2277:2288, 1/A1/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8EVP_093 | 1/A1/2391:2394, 1/A1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8EVP_094 | 1/A1/2396:2398, 1/A1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8EVP_095 | 1/A1/2409:2411, 1/A1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8EVP_096 | 1/A1/2412:2413, 1/A1/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8EVP_098 | 1/A1/2423:2425, 1/A1/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8EVP_105 | 1/A1/2520:2526, 1/A1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8EVP_106 | 1/A1/2614:2615, 1/A1/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_8EVP_107 | 1/A1/2666:2668, 1/A1/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_8EVP_108 | 1/A1/2718:2721, 1/A1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8EVP_110 | 1/A1/2770:2773, 1/A1/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_8EVP_111 | 1/A1/2823:2824, 1/A1/2865:2867 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_8EVP_112 | 1/A1/2824:2826, 1/A1/2863:2865 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_8EVP_113 | 1/A1/2826:2828, 1/A1/2862:2863 | Major groove platform | geometric IL_4V9F_083 IL_46637.2 | |
| IL_8EVP_114 | 1/A1/2828:2830, 1/A1/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_8EVP_115 | 1/A1/2835:2839, 1/A1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8EVP_116 | 1/A1/2876:2877, 1/A1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8EVP_118 | 1/A1/2879:2881, 1/A1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_8EVP_119 | 1/A1/2881:2882, 1/A1/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_8EVP_120 | 1/A1/2889:2891, 1/A1/2912:2914 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_8EVP_266 | 1/A1/2889:2892, 1/A1/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.3 | |
| IL_8EVP_121 | 1/A1/2891:2892, 1/A1/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_8EVP_122 | 1/A1/2918:2920, 1/A1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8EVP_124 | 1/A1/2960:2961, 1/A1/2970:2972 | Single bulged A | geometric IL_1I9X_002 IL_14190.2 | |
| IL_8EVP_125 | 1/A1/3004:3007, 1/A1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8EVP_126 | 1/A1/3012:3014, 1/A1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_8EVP_127 | 1/A1/3016:3018, 1/A1/3036:3038 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_8EVP_128 | 1/A1/3018:3025, 1/A1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8EVP_129 | 1/A1/3047:3051, 1/A1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_8EVP_130 | 1/A1/3054:3059, 1/A1/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_8EVP_131 | 1/A1/3063:3064, 1/A1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8EVP_132 | 1/A1/3103:3107, 1/A1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8EVP_133 | 1/A1/3164:3166, 1/A1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8EVP_134 | 1/A1/3168:3170, 1/A1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_8EVP_135 | 1/A1/3177:3179, 1/A1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_8EVP_136 | 1/A1/3179:3188, 1/A1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_8EVP_137 | 1/A1/3193:3194, 1/A1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8EVP_138 | 1/A1/3225:3229, 1/A1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_8EVP_139 | 1/A1/3233:3235, 1/A1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.3 | |
| IL_8EVP_140 | 1/A1/3235:3238, 1/A1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_8EVP_141 | 1/A1/3300:3303, 1/A1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_8EVP_142 | 1/A1/3318:3320, 1/A1/3387:3388 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_8EVP_143 | 1/A1/3324:3325, 1/A1/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_8EVP_144 | 1/A1/3328:3330, 1/A1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8EVP_145 | 1/A1/3332:3337, 1/A1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8EVP_146 | 1/A1/3340:3342, 1/A1/3363:3364 | Single bulged U | geometric IL_3WBM_001 IL_97561.3 | |
| IL_8EVP_147 | 1/A1/3342:3345, 1/A1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8EVP_148 | 1/A1/3349:3350, 1/A1/3353:3356 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_8EVP_149 | 1/A3/15:16, 1/A3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8EVP_150 | 1/A3/21:27, 1/A3/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_8EVP_151 | 1/A3/28:29, 1/A3/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_8EVP_152 | 1/A3/29:30, 1/A3/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_8EVP_153 | 1/A3/32:36, 1/A3/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_8EVP_154 | 1/A3/72:80, 1/A3/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8EVP_155 | 1/A3/84:87, 1/A3/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8EVP_156 | 1/A4/44:64, 1/A4/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8EVP_157 | 1/A4/64:66, 1/A4/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_8EVP_158 | 1/A4/68:69, 1/A4/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_8EVP_159 | 1/B5/24:26, 1/B5/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_8EVP_161 | 1/B5/35:37, 1/B5/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_8EVP_162 | 1/B5/37:41, 1/B5/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_8EVP_163 | 1/B5/42:48, 1/B5/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8EVP_164 | 1/B5/50:52, 1/B5/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8EVP_165 | 1/B5/58:63, 1/B5/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8EVP_166 | 1/B5/64:69, 1/B5/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8EVP_167 | 1/B5/109:112, 1/B5/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_8EVP_168 | 1/B5/113:116, 1/B5/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_8EVP_169 | 1/B5/117:122, 1/B5/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8EVP_170 | 1/B5/143:149, 1/B5/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_8EVP_171 | 1/B5/150:152, 1/B5/162:164 | Isolated cWH basepair | geometric IL_4KQ0_002 IL_10892.2 | |
| IL_8EVP_172 | 1/B5/204:206, 1/B5/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_8EVP_173 | 1/B5/206:208, 1/B5/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_8EVP_175 | 1/B5/265:267, 1/B5/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8EVP_176 | 1/B5/270:273, 1/B5/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8EVP_177 | 1/B5/275:276, 1/B5/279:281 | Single bulged U | geometric IL_5FQ5_002 IL_97561.3 | |
| IL_8EVP_178 | 1/B5/311:316, 1/B5/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8EVP_179 | 1/B5/318:323, 1/B5/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_8EVP_180 | 1/B5/363:365, 1/B5/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8EVP_181 | 1/B5/389:391, 1/B5/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8EVP_267 | 1/B5/411:413, 1/B5/420:422 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8EVP_182 | 1/B5/439:441, 1/B5/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_8EVP_183 | 1/B5/443:447, 1/B5/460:461 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_8EVP_184 | 1/B5/447:448, 1/B5/458:460 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8EVP_185 | 1/B5/480:484, 1/B5/503:508 | No text annotation | ||
| IL_8EVP_188 | 1/B5/516:518, 1/B5/533:536 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_8EVP_189 | 1/B5/518:520, 1/B5/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_8EVP_190 | 1/B5/550:557, 1/B5/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_8EVP_191 | 1/B5/557:559, 1/B5/586:587 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_8EVP_268 | 1/B5/562:568, 1/B5/575:583 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_8EVP_193 | 1/B5/616:622, 1/B5/1103:1104 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8EVP_194 | 1/B5/624:626, 1/B5/972:974 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8EVP_195 | 1/B5/627:631, 1/B5/967:971 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8EVP_196 | 1/B5/646:648, 1/B5/685:687 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_8EVP_198 | 1/B5/745:746, 1/B5/801:804 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_8EVP_199 | 1/B5/747:749, 1/B5/798:800 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8EVP_200 | 1/B5/750:758, 1/B5/790:797 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8EVP_201 | 1/B5/816:821, 1/B5/849:853 | No text annotation | ||
| IL_8EVP_204 | 1/B5/864:865, 1/B5/961:964 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8EVP_269 | 1/B5/867:868, 1/B5/957:959 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_8EVP_270 | 1/B5/870:872, 1/B5/953:955 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_01003.3 | |
| IL_8EVP_207 | 1/B5/873:877, 1/B5/949:952 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_8EVP_208 | 1/B5/884:887, 1/B5/923:926 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8EVP_209 | 1/B5/892:898, 1/B5/909:918 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8EVP_210 | 1/B5/984:989, 1/B5/1013:1015 | Other IL | geometric IL_4V88_435 NA | |
| IL_8EVP_211 | 1/B5/989:993, 1/B5/1009:1013 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_8EVP_212 | 1/B5/1033:1035, 1/B5/1094:1100 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8EVP_213 | 1/B5/1040:1043, 1/B5/1073:1076 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8EVP_214 | 1/B5/1050:1052, 1/B5/1065:1066 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_8EVP_215 | 1/B5/1110:1117, 1/B5/1128:1133 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8EVP_216 | 1/B5/1145:1146, 1/B5/2238:2240 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8EVP_217 | 1/B5/1148:1150, 1/B5/2235:2236 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_8EVP_218 | 1/B5/1156:1159, 1/B5/2225:2229 | C-loop | homologous IL_4V88_443 NA | |
| IL_8EVP_219 | 1/B5/1172:1174, 1/B5/2072:2074 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_8EVP_220 | 1/B5/1177:1178, 1/B5/2067:2069 | Minor groove platform | homologous IL_4V88_445 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8EVP_001 | No text annotation | ||
| IL_8EVP_011 | Isolated cWH basepair | ||
| IL_8EVP_019 | No text annotation | ||
| IL_8EVP_029 | No text annotation | ||
| IL_8EVP_030 | Isolated non-canonical cWW pair | ||
| IL_8EVP_043 | No text annotation | ||
| IL_8EVP_260 | No text annotation | ||
| IL_8EVP_048 | Tandem non-canonical cWW pairs | ||
| IL_8EVP_056 | No text annotation | ||
| IL_8EVP_057 | No text annotation | ||
| IL_8EVP_058 | No text annotation | ||
| IL_8EVP_059 | Major groove platform with extra cWW | ||
| IL_8EVP_064 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_8EVP_065 | No text annotation | ||
| IL_8EVP_078 | Major groove platform with extra pair | ||
| IL_8EVP_083 | Isolated non-canonical cWW pair | ||
| IL_8EVP_092 | No text annotation | ||
| IL_8EVP_097 | Isolated non-canonical cWW pair | ||
| IL_8EVP_099 | Intercalated cWW | ||
| IL_8EVP_100 | No text annotation | ||
| IL_8EVP_265 | No text annotation | ||
| IL_8EVP_101 | No text annotation | ||
| IL_8EVP_102 | No text annotation | ||
| IL_8EVP_103 | No text annotation | ||
| IL_8EVP_104 | No text annotation | ||
| IL_8EVP_109 | Isolated non-canonical cWW pair | ||
| IL_8EVP_117 | Isolated non-canonical cWW pair | ||
| IL_8EVP_123 | Tandem non-canonical cWW pairs | ||
| IL_8EVP_160 | Isolated non-canonical cWW pair | ||
| IL_8EVP_174 | No text annotation | ||
| IL_8EVP_186 | No text annotation | ||
| IL_8EVP_187 | No text annotation | ||
| IL_8EVP_192 | No text annotation | ||
| IL_8EVP_197 | No text annotation | ||
| IL_8EVP_202 | No text annotation | ||
| IL_8EVP_203 | Isolated non-canonical cWW pair | ||
| IL_8EVP_205 | Tandem non-canonical cWW pairs | ||
| IL_8EVP_206 | Tandem non-canonical cWW pairs | ||
| IL_8EVP_221 | Isolated non-canonical cWW pair | ||
| IL_8EVP_222 | No text annotation | ||
| IL_8EVP_279 | No text annotation | ||
| IL_8EVP_223 | No text annotation | ||
| IL_8EVP_271 | Single bulged U | ||
| IL_8EVP_224 | Isolated cWH basepair | ||
| IL_8EVP_225 | Isolated cWS basepair | ||
| IL_8EVP_272 | No text annotation | ||
| IL_8EVP_226 | Minor groove platform with extra cWW | ||
| IL_8EVP_227 | Isolated non-canonical cWW pair | ||
| IL_8EVP_273 | Single bulged A | ||
| IL_8EVP_228 | Isolated cWH basepair | ||
| IL_8EVP_229 | Minor groove platform | ||
| IL_8EVP_230 | Isolated non-canonical cWW pair | ||
| IL_8EVP_231 | No text annotation | ||
| IL_8EVP_274 | No text annotation | ||
| IL_8EVP_232 | No text annotation | ||
| IL_8EVP_233 | Major groove platform; stack outside cWW | ||
| IL_8EVP_234 | No text annotation | ||
| IL_8EVP_235 | 180 degree turn | ||
| IL_8EVP_236 | Tandem non-canonical cWW pairs | ||
| IL_8EVP_237 | No text annotation | ||
| IL_8EVP_238 | No text annotation | ||
| IL_8EVP_239 | No text annotation | ||
| IL_8EVP_240 | Isolated non-canonical cWW pair | ||
| IL_8EVP_241 | No text annotation | ||
| IL_8EVP_242 | Isolated non-canonical cWW pair | ||
| IL_8EVP_243 | Double sheared | ||
| IL_8EVP_244 | Single bulged U | ||
| IL_8EVP_245 | Isolated non-canonical cWW pair | ||
| IL_8EVP_246 | Double sheared | ||
| IL_8EVP_247 | Isolated non-canonical cWW pair | ||
| IL_8EVP_248 | Tandem non-canonical cWW pairs | ||
| IL_8EVP_249 | Triple sheared | ||
| IL_8EVP_275 | No text annotation | ||
| IL_8EVP_250 | Single stack bend | ||
| IL_8EVP_251 | No text annotation | ||
| IL_8EVP_252 | Isolated non-canonical cWW pair | ||
| IL_8EVP_253 | Isolated non-canonical cWW pair | ||
| IL_8EVP_280 | No text annotation | ||
| IL_8EVP_276 | No text annotation | ||
| IL_8EVP_254 | No text annotation | ||
| IL_8EVP_255 | Isolated non-canonical cWW pair | ||
| IL_8EVP_256 | No text annotation | ||
| IL_8EVP_277 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8EVP_001 | 1/A1/113:123, 1/A1/149:158, 1/A1/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_8EVP_024 | 1/A1/113:124, 1/A1/144:158, 1/A1/263:267 | No text annotation | ||
| J3_8EVP_025 | 1/A1/185:189, 1/A1/205:214, 1/A1/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8EVP_026 | 1/A1/340:356, 1/A1/363:368, 1/A4/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8EVP_027 | 1/A1/369:376, 1/A1/403:404, 1/A4/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8EVP_028 | 1/A1/369:379, 1/A1/390:404, 1/A4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8EVP_029 | 1/A1/502:503, 1/A1/588:597, 1/A1/606:611 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8EVP_002 | 1/A1/814:820, 1/A1/905:907, 1/A1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8EVP_030 | 1/A1/829:831, 1/A1/863:867, 1/A1/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8EVP_031 | 1/A1/986:987, 1/A1/1062:1066, 1/A1/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_8EVP_005 | 1/A1/1479:1485, 1/A1/1857:1859, 1/A1/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8EVP_006 | 1/A1/1488:1491, 1/A1/1837:1843, 1/A1/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8EVP_033 | 1/A1/1526:1531, 1/A1/1591:1595, 1/A1/1612:1613 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8EVP_034 | 1/A1/1537:1542, 1/A1/1551:1561, 1/A1/1578:1584 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8EVP_035 | 1/A1/1631:1632, 1/A1/1641:1649, 1/A1/1806:1811 | No text annotation | ||
| J3_8EVP_036 | 1/A1/1654:1658, 1/A1/1791:1792, 1/A1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8EVP_007 | 1/A1/2432:2435, 1/A1/2512:2517, 1/A1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8EVP_008 | 1/A1/2529:2532, 1/A1/2547:2563, 1/A1/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8EVP_037 | 1/A1/2651:2653, 1/A1/2754:2765, 1/A1/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8EVP_010 | 1/A1/2664:2666, 1/A1/2690:2692, 1/A1/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8EVP_011 | 1/A1/2886:2889, 1/A1/2914:2916, 1/A1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8EVP_038 | 1/A1/3171:3176, 1/A1/3212:3220, 1/A1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_8EVP_012 | 1/A1/3298:3300, 1/A1/3314:3318, 1/A1/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_8EVP_039 | 1/A3/9:14, 1/A3/66:67, 1/A3/111:112 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8EVP_040 | 1/A4/44:45, 1/A4/58:64, 1/A4/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_8EVP_041 | 1/B5/41:42, 1/B5/433:439, 1/B5/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8EVP_042 | 1/B5/41:48, 1/B5/431:439, 1/B5/464:466 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_8EVP_043 | 1/B5/213:228, 1/B5/237:243, 1/B5/250:252 | No text annotation | ||
| J3_8EVP_044 | 1/B5/633:635, 1/B5/860:864, 1/B5/964:965 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8EVP_045 | 1/B5/633:635, 1/B5/860:865, 1/B5/961:965 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_8EVP_013 | 1/B5/759:762, 1/B5/772:774, 1/B5/784:789 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8EVP_014 | 1/B5/880:883, 1/B5/927:935, 1/B5/942:946 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8EVP_015 | 1/B5/1036:1038, 1/B5/1078:1082, 1/B5/1089:1093 | No text annotation | homologous J3_4V88_034 NA | |
| J3_8EVP_016 | 1/B5/1160:1163, 1/B5/2189:2195, 1/B5/2217:2224 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8EVP_017 | 1/B5/1167:1170, 1/B5/2076:2078, 1/B5/2182:2185 | No text annotation | homologous J3_4V88_036 NA | |
| J3_8EVP_018 | 1/B5/1179:1186, 1/B5/1806:1817, 1/B5/2062:2066 | No text annotation | homologous J3_8C3A_040 NA | |
| J4_8EVP_001 | 1/A1/112:113, 1/A1/267:272, 1/A1/293:299, 1/A1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8EVP_002 | 1/A1/185:189, 1/A1/205:208, 1/A1/212:214, 1/A1/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8EVP_003 | 1/A1/1451:1457, 1/A1/1475:1476, 1/A1/1877:1880, 1/A1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_8EVP_004 | 1/A1/1492:1496, 1/A1/1520:1525, 1/A1/1614:1615, 1/A1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8EVP_005 | 1/A1/1674:1675, 1/A1/1693:1698, 1/A1/1747:1753, 1/A1/1772:1773 | No text annotation | ||
| J4_8EVP_006 | 1/A1/2130:2134, 1/A1/2146:2150, 1/A1/2186:2190, 1/A1/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8EVP_007 | 1/A1/2192:2194, 1/A1/2248:2249, 1/A1/2267:2276, 1/A1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8EVP_008 | 1/A1/2654:2658, 1/A1/2712:2716, 1/A1/2740:2742, 1/A1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8EVP_009 | 1/A1/3010:3012, 1/A1/3042:3043, 1/A1/3098:3100, 1/A1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8EVP_010 | 1/B5/99:107, 1/B5/307:309, 1/B5/357:361, 1/B5/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8EVP_011 | 1/B5/622:624, 1/B5/974:979, 1/B5/1020:1031, 1/B5/1102:1103 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_8EVP_001 | 1/A1/20:22, 1/A4/35:42, 1/A4/102:107, 1/A4/115:116, 1/A4/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_8EVP_002 | 1/A1/658:663, 1/A1/799:802, 1/A1/941:944, 1/A1/1375:1376, 1/A1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8EVP_003 | 1/A1/675:678, 1/A1/702:706, 1/A1/713:721, 1/A1/749:751, 1/A1/782:787 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8EVP_004 | 1/A1/1906:1914, 1/A1/1938:1939, 1/A1/2109:2110, 1/A1/2114:2122, 1/A1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_8EVP_005 | 1/A1/2399:2406, 1/A1/2815:2823, 1/A1/2867:2876, 1/A1/2951:2957, 1/A1/2975:2980 | No text annotation | ||
| J5_8EVP_006 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2651, 1/A1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8EVP_007 | 1/B5/31:35, 1/B5/473:479, 1/B5/509:516, 1/B5/536:546, 1/B5/592:595 | No text annotation | ||
| J5_8EVP_008 | 1/B5/54:57, 1/B5/90:97, 1/B5/386:388, 1/B5/409:411, 1/B5/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8EVP_009 | 1/B5/124:143, 1/B5/172:182, 1/B5/203:204, 1/B5/263:265, 1/B5/289:293 | No text annotation | ||
| J5_8EVP_010 | 1/B5/124:143, 1/B5/172:182, 1/B5/203:204, 1/B5/263:267, 1/B5/288:293 | No text annotation | ||
| J5_8EVP_011 | 1/B5/636:641, 1/B5/692:699, 1/B5/737:743, 1/B5/806:821, 1/B5/849:859 | No text annotation | ||
| J6_8EVP_001 | 1/A1/22:27, 1/A1/58:68, 1/A1/75:79, 1/A1/106:110, 1/A1/321:331, 1/A4/32:35 | No text annotation | ||
| J6_8EVP_002 | 1/A1/2416:2419, 1/A1/2611:2614, 1/A1/2627:2628, 1/A1/2650:2653, 1/A1/2754:2765, 1/A1/2793:2804 | No text annotation | ||
| J7_8EVP_001 | 1/A1/949:956, 1/A1/965:968, 1/A1/1114:1117, 1/A1/1141:1146, 1/A1/1157:1161, 1/A1/1338:1339, 1/A1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8EVP_003 | No text annotation | ||
| J3_8EVP_032 | No text annotation | ||
| J3_8EVP_004 | No text annotation | ||
| J3_8EVP_048 | No text annotation | ||
| J3_8EVP_009 | No text annotation | ||
| J3_8EVP_019 | No text annotation | ||
| J3_8EVP_020 | No text annotation | ||
| J3_8EVP_046 | No text annotation | ||
| J3_8EVP_021 | No text annotation | ||
| J3_8EVP_047 | No text annotation | ||
| J3_8EVP_022 | No text annotation | ||
| J3_8EVP_023 | No text annotation |
Coloring options: