HL_8EVP_020

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(A2M)CGUGCAAAUC

Length

12 nucleotides

Bulged bases

8EVP|1|A1|U|879, 8EVP|1|A1|A|883

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|A1|G|875
8EVP|1|A1|A2M|876
8EVP|1|A1|C|877
8EVP|1|A1|G|878
8EVP|1|A1|U|879
8EVP|1|A1|G|880
8EVP|1|A1|C|881
8EVP|1|A1|A|882
8EVP|1|A1|A|883
8EVP|1|A1|A|884
8EVP|1|A1|U|885
8EVP|1|A1|C|886

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A