HL_8EVP_037

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8EVP|1|A1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1102

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8EVP|1|A1|G|1680
8EVP|1|A1|U|1681
8EVP|1|A1|U|1682
8EVP|1|A1|A|1683
8EVP|1|A1|U|1684
8EVP|1|A1|C|1685
8EVP|1|A1|U|1686
8EVP|1|A1|U|1687
8EVP|1|A1|U|1688

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A