HL_8EVP_051

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8EVP|1|A1|A|2372, 8EVP|1|A1|A|2373, 8EVP|1|A1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0399

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8EVP|1|A1|G|2369
8EVP|1|A1|G|2370
8EVP|1|A1|G|2371
8EVP|1|A1|A|2372
8EVP|1|A1|A|2373
8EVP|1|A1|C|2374
8EVP|1|A1|G|2375
8EVP|1|A1|G|2376
8EVP|1|A1|G|2377
8EVP|1|A1|C|2378

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Ae

RPL32 isoform 1