HL_8EVP_053
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AAUUCAUUUU
- Length
- 10 nucleotides
- Bulged bases
- 8EVP|1|A1|U|2537, 8EVP|1|A1|U|2538, 8EVP|1|A1|C|2539, 8EVP|1|A1|A|2540, 8EVP|1|A1|U|2541, 8EVP|1|A1|U|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_053 not in the Motif Atlas
- Geometric match to HL_1P6V_001
- Geometric discrepancy: 0.3363
- The information below is about HL_1P6V_001
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8EVP|1|A1|A|2535
8EVP|1|A1|A|2536
8EVP|1|A1|U|2537
8EVP|1|A1|U|2538
8EVP|1|A1|C|2539
8EVP|1|A1|A|2540
8EVP|1|A1|U|2541
8EVP|1|A1|U|2542
8EVP|1|A1|U|2543
8EVP|1|A1|U|2544
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain BB
- RPS1A isoform 1
Coloring options: