HL_8EVP_057

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.4099

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8EVP|1|A1|A|2673
8EVP|1|A1|A|2674
8EVP|1|A1|C|2675
8EVP|1|A1|A|2676
8EVP|1|A1|G|2677
8EVP|1|A1|A|2678
8EVP|1|A1|A|2679
8EVP|1|A1|A|2680
8EVP|1|A1|U|2681

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AJ

RPL11A isoform 1