HL_8EVP_064

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_064 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.0994

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8EVP|1|A1|U|2920
8EVP|1|A1|OMU|2921
8EVP|1|A1|OMG|2922
8EVP|1|A1|U|2923
8EVP|1|A1|U|2924
8EVP|1|A1|C|2925
8EVP|1|A1|A|2926

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3