HL_8EVP_071
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUAUACGAC
- Length
- 9 nucleotides
- Bulged bases
- 8EVP|1|A1|U|3304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_071 not in the Motif Atlas
- Homologous match to HL_8C3A_071
- Geometric discrepancy: 0.0778
- The information below is about HL_8C3A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.4
- Basepair signature
- cWW-cSW-F-F-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
8EVP|1|A1|G|3303
8EVP|1|A1|U|3304
8EVP|1|A1|A|3305
8EVP|1|A1|U|3306
8EVP|1|A1|A|3307
8EVP|1|A1|C|3308
8EVP|1|A1|G|3309
8EVP|1|A1|A|3310
8EVP|1|A1|C|3311
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ad
- 60S ribosomal protein L31-A
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