HL_8EVP_081

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EVP|1|B5|C|191, 8EVP|1|B5|U|192, 8EVP|1|B5|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_081 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2913

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8EVP|1|B5|C|186
8EVP|1|B5|G|187
8EVP|1|B5|A|188
8EVP|1|B5|C|189
8EVP|1|B5|C|190
8EVP|1|B5|C|191
8EVP|1|B5|U|192
8EVP|1|B5|U|193
8EVP|1|B5|U|194
8EVP|1|B5|G|195
8EVP|1|B5|G|196
8EVP|1|B5|A|197
8EVP|1|B5|A|198
8EVP|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A