HL_8EVP_093

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EVP|1|B5|C|653, 8EVP|1|B5|G|656, 8EVP|1|B5|C|658, 8EVP|1|B5|G|675, 8EVP|1|B5|U|680

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|B5|U|649
8EVP|1|B5|U|650
8EVP|1|B5|G|651
8EVP|1|B5|G|652
8EVP|1|B5|C|653
8EVP|1|B5|C|654
8EVP|1|B5|G|655
8EVP|1|B5|G|656
8EVP|1|B5|U|657
8EVP|1|B5|C|658
8EVP|1|B5|G|675
8EVP|1|B5|G|676
8EVP|1|B5|A|677
8EVP|1|B5|U|678
8EVP|1|B5|U|679
8EVP|1|B5|U|680
8EVP|1|B5|C|681
8EVP|1|B5|C|682
8EVP|1|B5|A|683
8EVP|1|B5|A|684

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1