HL_8EVP_096

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8EVP|1|B5|U|778, 8EVP|1|B5|U|780, 8EVP|1|B5|U|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVP_096 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.3886

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8EVP|1|B5|C|776
8EVP|1|B5|G|777
8EVP|1|B5|U|778
8EVP|1|B5|A|779
8EVP|1|B5|U|780
8EVP|1|B5|U|781
8EVP|1|B5|G|782

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A