HL_8EVP_100
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGAUCAGAUAC(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 8EVP|1|B5|U|1003
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVP_100 not in the Motif Atlas
- Geometric match to HL_5AXM_001
- Geometric discrepancy: 0.3454
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8EVP|1|B5|U|995
8EVP|1|B5|G|996
8EVP|1|B5|A|997
8EVP|1|B5|U|998
8EVP|1|B5|C|999
8EVP|1|B5|A|1000
8EVP|1|B5|G|1001
8EVP|1|B5|A|1002
8EVP|1|B5|U|1003
8EVP|1|B5|A|1004
8EVP|1|B5|C|1005
8EVP|1|B5|OMC|1006
8EVP|1|B5|G|1007
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
- Chain EC
- Internal ribosome entry site
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