HL_8EVP_115

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCGAAAACUCUCCGAACACGG

Length

21 nucleotides

Bulged bases

8EVP|1|EC|A|6791, 8EVP|1|EC|A|6792, 8EVP|1|EC|C|6794, 8EVP|1|EC|U|6795

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|EC|U|6787
8EVP|1|EC|C|6788
8EVP|1|EC|G|6789
8EVP|1|EC|A|6790
8EVP|1|EC|A|6791
8EVP|1|EC|A|6792
8EVP|1|EC|A|6793
8EVP|1|EC|C|6794
8EVP|1|EC|U|6795
8EVP|1|EC|C|6796
8EVP|1|EC|U|6797
8EVP|1|EC|C|6798
8EVP|1|EC|C|6799
8EVP|1|EC|G|6800
8EVP|1|EC|A|6801
8EVP|1|EC|A|6802
8EVP|1|EC|C|6803
8EVP|1|EC|A|6804
8EVP|1|EC|C|6805
8EVP|1|EC|G|6808
8EVP|1|EC|G|6809

Current chains

Chain EC

Internal ribosome entry site

Nearby chains

Chain AJ

RPL11A isoform 1

Chain Ao

60S ribosomal protein L42-A