HL_8EVP_126

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGGCCCAUUCGGGUC

Length

15 nucleotides

Bulged bases

8EVP|1|B5|C|491, 8EVP|1|B5|A|492, 8EVP|1|B5|U|493, 8EVP|1|B5|U|494, 8EVP|1|B5|C|495, 8EVP|1|B5|G|498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|B5|G|486
8EVP|1|B5|G|487
8EVP|1|B5|G|488
8EVP|1|B5|C|489
8EVP|1|B5|C|490
8EVP|1|B5|C|491
8EVP|1|B5|A|492
8EVP|1|B5|U|493
8EVP|1|B5|U|494
8EVP|1|B5|C|495
8EVP|1|B5|G|496
8EVP|1|B5|G|497
8EVP|1|B5|G|498
8EVP|1|B5|U|499
8EVP|1|B5|C|500

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Be

40S ribosomal protein S30-A