Loop HL_8EVP

3D structure

PDB id: 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å

Loop

Sequence: GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC
Length: 33 nucleotides
Bulged bases: 8EVP|1|B5|A|705, 8EVP|1|B5|A|706, 8EVP|1|B5|C|707, 8EVP|1|B5|U|710, 8EVP|1|B5|G|711, 8EVP|1|B5|U|714, 8EVP|1|B5|C|715, 8EVP|1|B5|U|717, 8EVP|1|B5|U|718, 8EVP|1|B5|G|719, 8EVP|1|B5|U|720, 8EVP|1|B5|G|721, 8EVP|1|B5|C|723, 8EVP|1|B5|C|725, 8EVP|1|B5|U|726, 8EVP|1|B5|G|728, 8EVP|1|B5|C|730, 8EVP|1|B5|G|731, 8EVP|1|B5|A|732, 8EVP|1|B5|A|733
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8EVP|1|B5|G|702
8EVP|1|B5|C|703
8EVP|1|B5|U|704
8EVP|1|B5|A|705
8EVP|1|B5|A|706
8EVP|1|B5|C|707
8EVP|1|B5|C|708
8EVP|1|B5|U|709
8EVP|1|B5|U|710
8EVP|1|B5|G|711
8EVP|1|B5|A|712
8EVP|1|B5|G|713
8EVP|1|B5|U|714
8EVP|1|B5|C|715
8EVP|1|B5|C|716
8EVP|1|B5|U|717
8EVP|1|B5|U|718
8EVP|1|B5|G|719
8EVP|1|B5|U|720
8EVP|1|B5|G|721
8EVP|1|B5|G|722
8EVP|1|B5|C|723
8EVP|1|B5|U|724
8EVP|1|B5|C|725
8EVP|1|B5|U|726
8EVP|1|B5|U|727
8EVP|1|B5|G|728
8EVP|1|B5|G|729
8EVP|1|B5|C|730
8EVP|1|B5|G|731
8EVP|1|B5|A|732
8EVP|1|B5|A|733
8EVP|1|B5|C|734

Current chains

Chain B5: 18S rRNA

Nearby chains

Chain BE: 40S ribosomal protein S4-A
Chain BG: 40S ribosomal protein S6-A

HL_8EVP_127