HL_8EVQ_082

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8EVQ|1|B5|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_082 not in the Motif Atlas

Homologous match to HL_8C3A_196

Geometric discrepancy: 0.5972

The information below is about HL_8C3A_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8EVQ|1|B5|C|230
8EVQ|1|B5|U|231
8EVQ|1|B5|U|232
8EVQ|1|B5|C|233
8EVQ|1|B5|G|234
8EVQ|1|B5|G|235

Current chains

Chain B5

18S rRNA

Nearby chains