HL_8EVQ_090

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

8EVQ|1|B5|C|491, 8EVQ|1|B5|A|492, 8EVQ|1|B5|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_090 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3816

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EVQ|1|B5|C|490
8EVQ|1|B5|C|491
8EVQ|1|B5|A|492
8EVQ|1|B5|U|493
8EVQ|1|B5|U|494
8EVQ|1|B5|C|495
8EVQ|1|B5|G|496
8EVQ|1|B5|G|497

Current chains

Chain B5

18S rRNA

Nearby chains