HL_8EVQ_123

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

8EVQ|1|A1|U|1569

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_123 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3535

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8EVQ|1|A1|A|1566
8EVQ|1|A1|U|1567
8EVQ|1|A1|U|1568
8EVQ|1|A1|U|1569
8EVQ|1|A1|U|1570
8EVQ|1|A1|A|1571
8EVQ|1|A1|U|1572

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AX

60S ribosomal protein L25