HL_8EVR_094

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUGUGG

Length

7 nucleotides

Bulged bases

8EVR|1|B5|U|718, 8EVR|1|B5|U|721, 8EVR|1|B5|G|722

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVR_094 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3561

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8EVR|1|B5|C|717
8EVR|1|B5|U|718
8EVR|1|B5|U|719
8EVR|1|B5|G|720
8EVR|1|B5|U|721
8EVR|1|B5|G|722
8EVR|1|B5|G|723

Current chains

Chain B5

18S rRNA

Nearby chains