HL_8EVR_098
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVR_098 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1205
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8EVR|1|B5|A|900
8EVR|1|B5|G|901
8EVR|1|B5|G|902
8EVR|1|B5|U|903
8EVR|1|B5|G|904
8EVR|1|B5|A|905
8EVR|1|B5|A|906
8EVR|1|B5|A|907
8EVR|1|B5|U|908
8EVR|1|B5|U|909
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- Rps5p
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
- Chain EC
- TSV IRES
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