HL_8EVR_104

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAUCGAAAACUCUCCGAACACGGUGU*G

Length

27 nucleotides

Bulged bases

8EVR|1|EC|A|6791, 8EVR|1|EC|A|6792, 8EVR|1|EC|A|6793, 8EVR|1|EC|C|6794

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVR_104 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2898

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EVR|1|EC|C|6785
8EVR|1|EC|A|6786
8EVR|1|EC|U|6787
8EVR|1|EC|C|6788
8EVR|1|EC|G|6789
8EVR|1|EC|A|6790
8EVR|1|EC|A|6791
8EVR|1|EC|A|6792
8EVR|1|EC|A|6793
8EVR|1|EC|C|6794
8EVR|1|EC|U|6795
8EVR|1|EC|C|6796
8EVR|1|EC|U|6797
8EVR|1|EC|C|6798
8EVR|1|EC|C|6799
8EVR|1|EC|G|6800
8EVR|1|EC|A|6801
8EVR|1|EC|A|6802
8EVR|1|EC|C|6803
8EVR|1|EC|A|6804
8EVR|1|EC|C|6805
8EVR|1|EC|G|6808
8EVR|1|EC|G|6809
8EVR|1|EC|U|6810
8EVR|1|EC|G|6811
8EVR|1|EC|U|6810
*
8EVR|1|EC|G|6811

Current chains

Chain EC

TSV IRES

Nearby chains