HL_8EVS_027

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8EVS|1|A1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.252

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8EVS|1|A1|C|1239
8EVS|1|A1|A|1240
8EVS|1|A1|U|1241
8EVS|1|A1|G|1242
8EVS|1|A1|G|1243
8EVS|1|A1|A|1244
8EVS|1|A1|A|1245
8EVS|1|A1|G|1246
8EVS|1|A1|U|1247
8EVS|1|A1|C|1248
8EVS|1|A1|G|1249

Current chains

Chain A1

25S rRNA

Nearby chains

Chain DC

Elongation factor 2