HL_8EVS_056
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- U(UR3)AAACG(A2M)UAACG
- Length
- 13 nucleotides
- Bulged bases
- 8EVS|1|A1|A|2637, 8EVS|1|A1|C|2644
- QA status
- Modified nucleotides: UR3, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVS_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0639
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8EVS|1|A1|U|2633
8EVS|1|A1|UR3|2634
8EVS|1|A1|A|2635
8EVS|1|A1|A|2636
8EVS|1|A1|A|2637
8EVS|1|A1|C|2638
8EVS|1|A1|G|2639
8EVS|1|A1|A2M|2640
8EVS|1|A1|U|2641
8EVS|1|A1|A|2642
8EVS|1|A1|A|2643
8EVS|1|A1|C|2644
8EVS|1|A1|G|2645
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- RPL10 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: