HL_8EVS_086
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVS_086 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1283
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8EVS|1|B5|U|368
8EVS|1|B5|A|369
8EVS|1|B5|A|370
8EVS|1|B5|G|371
8EVS|1|B5|G|372
8EVS|1|B5|G|373
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: