HL_8EVS_104

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAUCGAAAACUCUCCGAACACGGUGU*G

Length

27 nucleotides

Bulged bases

8EVS|1|EC|A|6792, 8EVS|1|EC|C|6794

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_104 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1038

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EVS|1|EC|C|6785
8EVS|1|EC|A|6786
8EVS|1|EC|U|6787
8EVS|1|EC|C|6788
8EVS|1|EC|G|6789
8EVS|1|EC|A|6790
8EVS|1|EC|A|6791
8EVS|1|EC|A|6792
8EVS|1|EC|A|6793
8EVS|1|EC|C|6794
8EVS|1|EC|U|6795
8EVS|1|EC|C|6796
8EVS|1|EC|U|6797
8EVS|1|EC|C|6798
8EVS|1|EC|C|6799
8EVS|1|EC|G|6800
8EVS|1|EC|A|6801
8EVS|1|EC|A|6802
8EVS|1|EC|C|6803
8EVS|1|EC|A|6804
8EVS|1|EC|C|6805
8EVS|1|EC|G|6808
8EVS|1|EC|G|6809
8EVS|1|EC|U|6810
8EVS|1|EC|G|6811
8EVS|1|EC|U|6810
*
8EVS|1|EC|G|6811

Current chains

Chain EC

TSV IRES

Nearby chains

Chain Ao

60S ribosomal protein L42-A