HL_8EVS_105

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAUUUA

Length

6 nucleotides

Bulged bases

8EVS|1|EC|A|6840, 8EVS|1|EC|U|6841, 8EVS|1|EC|U|6843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVS_105 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.3398

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

8EVS|1|EC|U|6839
8EVS|1|EC|A|6840
8EVS|1|EC|U|6841
8EVS|1|EC|U|6842
8EVS|1|EC|U|6843
8EVS|1|EC|A|6844

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A