HL_8EVT_007

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8EVT|1|A1|G|218, 8EVT|1|A1|A|219, 8EVT|1|A1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0659

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8EVT|1|A1|G|216
8EVT|1|A1|U|217
8EVT|1|A1|G|218
8EVT|1|A1|A|219
8EVT|1|A1|G|220
8EVT|1|A1|A|221
8EVT|1|A1|A|222
8EVT|1|A1|U|223
8EVT|1|A1|C|224

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

RPL4A isoform 1

Chain AY

60S ribosomal protein L26-A