HL_8EVT_012

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

8EVT|1|A1|G|542, 8EVT|1|A1|C|543, 8EVT|1|A1|C|544, 8EVT|1|A1|U|545, 8EVT|1|A1|C|546, 8EVT|1|A1|G|547, 8EVT|1|A1|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_012 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.413

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8EVT|1|A1|U|540
8EVT|1|A1|U|541
8EVT|1|A1|G|542
8EVT|1|A1|C|543
8EVT|1|A1|C|544
8EVT|1|A1|U|545
8EVT|1|A1|C|546
8EVT|1|A1|G|547
8EVT|1|A1|G|548
8EVT|1|A1|U|549
8EVT|1|A1|A|550
8EVT|1|A1|A|551

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A