HL_8EVT_022

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8EVT|1|A1|C|959, 8EVT|1|A1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1066

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EVT|1|A1|C|958
8EVT|1|A1|C|959
8EVT|1|A1|U|960
8EVT|1|A1|C|961
8EVT|1|A1|A|962
8EVT|1|A1|G|963

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1

Chain Ao

60S ribosomal protein L42-A