HL_8EVT_028

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

8EVT|1|A1|U|1267, 8EVT|1|A1|A|1271, 8EVT|1|A1|C|1272, 8EVT|1|A1|A|1274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_028 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.393

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8EVT|1|A1|G|1266
8EVT|1|A1|U|1267
8EVT|1|A1|G|1268
8EVT|1|A1|U|1269
8EVT|1|A1|A|1270
8EVT|1|A1|A|1271
8EVT|1|A1|C|1272
8EVT|1|A1|A|1273
8EVT|1|A1|A|1274
8EVT|1|A1|C|1275

Current chains

Chain A1

25S rRNA

Nearby chains