3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGUAC
Length
5 nucleotides
Bulged bases
8EVT|1|A1|G|2111
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EVT_045 not in the Motif Atlas
Homologous match to HL_5TBW_045
Geometric discrepancy: 0.1133
The information below is about HL_5TBW_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_55195.2
Basepair signature
cWW-F
Number of instances in this motif group
6

Unit IDs

8EVT|1|A1|G|2110
8EVT|1|A1|G|2111
8EVT|1|A1|U|2112
8EVT|1|A1|A|2113
8EVT|1|A1|C|2114

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AR
60S ribosomal protein L19-A
Chain AW
RPL24A isoform 1

Coloring options:


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