HL_8EVT_057
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAACAGAAAUC
- Length
- 11 nucleotides
- Bulged bases
- 8EVT|1|A1|A|2678, 8EVT|1|A1|A|2679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EVT_057 not in the Motif Atlas
- Geometric match to HL_5J7L_188
- Geometric discrepancy: 0.3208
- The information below is about HL_5J7L_188
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11805.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8EVT|1|A1|G|2672
8EVT|1|A1|A|2673
8EVT|1|A1|A|2674
8EVT|1|A1|C|2675
8EVT|1|A1|A|2676
8EVT|1|A1|G|2677
8EVT|1|A1|A|2678
8EVT|1|A1|A|2679
8EVT|1|A1|A|2680
8EVT|1|A1|U|2681
8EVT|1|A1|C|2682
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AJ
- RPL11A isoform 1
Coloring options: