HL_8EVT_088

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8EVT|1|B5|U|454, 8EVT|1|B5|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_088 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1529

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8EVT|1|B5|U|450
8EVT|1|B5|A|451
8EVT|1|B5|A|452
8EVT|1|B5|U|453
8EVT|1|B5|U|454
8EVT|1|B5|C|455
8EVT|1|B5|A|456

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A