HL_8EVT_097

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_097 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1701

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8EVT|1|B5|A|900
8EVT|1|B5|G|901
8EVT|1|B5|G|902
8EVT|1|B5|U|903
8EVT|1|B5|G|904
8EVT|1|B5|A|905
8EVT|1|B5|A|906
8EVT|1|B5|A|907
8EVT|1|B5|U|908
8EVT|1|B5|U|909

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A

Chain Ba

RPS26B isoform 1