HL_8EVT_101

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_101 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0714

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8EVT|1|B5|A|1084
8EVT|1|B5|G|1085
8EVT|1|B5|A|1086
8EVT|1|B5|A|1087
8EVT|1|B5|A|1088
8EVT|1|B5|U|1089

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain Ba

RPS26B isoform 1