HL_8EVT_103

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAUUUAG

Length

8 nucleotides

Bulged bases

8EVT|1|EC|A|6840, 8EVT|1|EC|U|6841, 8EVT|1|EC|U|6843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_103 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3628

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8EVT|1|EC|C|6838
8EVT|1|EC|U|6839
8EVT|1|EC|A|6840
8EVT|1|EC|U|6841
8EVT|1|EC|U|6842
8EVT|1|EC|U|6843
8EVT|1|EC|A|6844
8EVT|1|EC|G|6845

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A