HL_8EVT_106

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

8EVT|1|A1|U|879, 8EVT|1|A1|A|883, 8EVT|1|A1|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVT_106 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0665

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8EVT|1|A1|A2M|876
8EVT|1|A1|C|877
8EVT|1|A1|G|878
8EVT|1|A1|U|879
8EVT|1|A1|G|880
8EVT|1|A1|C|881
8EVT|1|A1|A|882
8EVT|1|A1|A|883
8EVT|1|A1|A|884
8EVT|1|A1|U|885

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A