3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
(OMC)CAAGG
Length
6 nucleotides
Bulged bases
8EVT|1|B5|A|416
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EVT_111 not in the Motif Atlas
Homologous match to HL_8P9A_200
Geometric discrepancy: 0.1135
The information below is about HL_8P9A_200
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

8EVT|1|B5|OMC|414
8EVT|1|B5|C|415
8EVT|1|B5|A|416
8EVT|1|B5|A|417
8EVT|1|B5|G|418
8EVT|1|B5|G|419

Current chains

Chain B5
18S rRNA

Nearby chains

Chain AV
60S ribosomal protein L23-A
Chain BG
40S ribosomal protein S6-A

Coloring options:


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