HL_8EWB_027

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8EWB|1|A1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2875

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8EWB|1|A1|C|1239
8EWB|1|A1|A|1240
8EWB|1|A1|U|1241
8EWB|1|A1|G|1242
8EWB|1|A1|G|1243
8EWB|1|A1|A|1244
8EWB|1|A1|A|1245
8EWB|1|A1|G|1246
8EWB|1|A1|U|1247
8EWB|1|A1|C|1248
8EWB|1|A1|G|1249

Current chains

Chain A1

25S rRNA

Nearby chains

Chain DC

Elongation factor 2