HL_8EWB_043

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8EWB|1|A1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_043 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1084

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8EWB|1|A1|C|1923
8EWB|1|A1|U|1924
8EWB|1|A1|U|1925
8EWB|1|A1|C|1926
8EWB|1|A1|G|1927
8EWB|1|A1|G|1928

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain Ap

60S ribosomal protein L43-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA