HL_8EWB_062

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0999

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8EWB|1|A1|C|2840
8EWB|1|A1|G|2841
8EWB|1|A1|U|2842
8EWB|1|A1|U|2843
8EWB|1|A1|C|2844
8EWB|1|A1|A|2845
8EWB|1|A1|U|2846
8EWB|1|A1|A|2847
8EWB|1|A1|G|2848

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2