HL_8EWB_063

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8EWB|1|A1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_063 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.097

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8EWB|1|A1|A|2897
8EWB|1|A1|G|2898
8EWB|1|A1|C|2899
8EWB|1|A1|A|2900
8EWB|1|A1|G|2901
8EWB|1|A1|A|2902
8EWB|1|A1|A|2903
8EWB|1|A1|U|2904

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain Am

Ubiquitin-60S ribosomal protein L40

Chain DC

Elongation factor 2