HL_8EWB_080

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8EWB|1|B5|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EWB_080 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2439

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8EWB|1|B5|G|154
8EWB|1|B5|U|155
8EWB|1|B5|A|156
8EWB|1|B5|A|157
8EWB|1|B5|U|158
8EWB|1|B5|U|159
8EWB|1|B5|C|160

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BY

40S ribosomal protein S24-A