HL_8EWB_120
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- (A2M)CGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8EWB|1|A1|U|879, 8EWB|1|A1|A|883, 8EWB|1|A1|A|884
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EWB_120 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.0724
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8EWB|1|A1|A2M|876
8EWB|1|A1|C|877
8EWB|1|A1|G|878
8EWB|1|A1|U|879
8EWB|1|A1|G|880
8EWB|1|A1|C|881
8EWB|1|A1|A|882
8EWB|1|A1|A|883
8EWB|1|A1|A|884
8EWB|1|A1|U|885
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AP
- 60S ribosomal protein L17-A
- Chain Aj
- 60S ribosomal protein L37-A
Coloring options: